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Presentations for Program:: Phylogenomics

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SessionDate/TimeLocationTitleTypeAuthorsKeywords

Monday, July 27th

Monday, July 27th, 12:30 pm to 2:30 pm · Virtual/Virtual
Session PHYL1: Contributed Papers: Phylogenomics I
Presiding: Olivier Maurin, Royal Botanic Gardens, Kew; Yujing Yan,
PHYL1001July 27th 12:30 pmVirtual/VirtualPhylotranscriptomics of the Petunieae clade of SolanaceaeOral PaperWheeler, Lucas C.; Walker, Joseph F. ; Ng, Julienne; Deanna, Rocío; Dunbar-Wallis, Amy; Backes, Alice; Pezzi, Pedro H.; Brandão de Freitas, Loreta; Barboza, Gloria E.; Moyroud, Edwige; Smith, Stacey.transcriptomics
Phylogenetics
Solanaceae
Petunieae
PHYL1002July 27th 12:45 pmVirtual/VirtualPhylogenomics of the Blue- and White-Fruited Dogwoods of Cornus L. - Insights into the Evolution of Eastern Asian-Eastern North American Disjunct CladesOral PaperLindelof, Kira; Zhou, Wenbin; Zhou, Wenbin; Xiang, Jenny.Cornus
eastern Asian-eastern North American disjunction
RAD-seq
Biogeography
ecological niche and morphospace
PHYL1003July 27th 1:00 pmVirtual/VirtualConsensus and discordance in next-generation phylogenetic analyses of DaucusOral PaperSpooner, David; Ruess, Holly; Ellison, Shelby; Senalik, Douglas; Simon, Philipp.carrot
phylogenomics
resequencing
SNPs
phylogenetic discordance
PHYL1004July 27th 1:15 pmVirtual/VirtualPhylogenomic analysis of New Zealand polyploid Azorella (Apiaceae)Oral PaperNing, Weixuan; Meudt, Heidi; Nicolas, Antoine; Plunkett, Gregory; Tate, Jennifer.phylogenomics
Target Enrichment
polyploidy
Azorella
phylogeny
genome size
PHYL1005July 27th 1:30 pmVirtual/VirtualPhylogenomic data reveals hard polytomies in the large genus Solanum (Solanaceae)Oral PaperGagnon, Edeline; Hilgenhof, Rebecca; Orejuela, Andrés; Sablok, Gaurav; Aubriot, Xavier; Giacomin, Leandro; Gouvêa, Yuri; Bohs, Lynn; Dodsworth, Steven; Maurin, Olivier; Forest, Félix; Poczai, Péter; Knapp, Sandra; Särkinen, Tiina.Solanaceae
PAFTOL
Solanales
PHYL1006July 27th 1:45 pmVirtual/VirtualA target capture approach for exploring the drivers and constraints of adaptive radiation in tillandsioid bromeliads (Tillandsia spp)Oral PaperYardeni, Gil; Hess, Jaqueline; de La Harpe, Marylaure; Barfuss, Michael H. J.; Viruel, Juan; Paris, Margot; Groot Crego, Clara; Till, Walter; Leroy, Thibault; Paun, Ovidiu; Lexer, Christian.Bromeliaceae
Targeted sequencing
Tillandsia
population genomics
phylogenomics
adaptive radiation
PHYL1007July 27th 2:00 pmVirtual/VirtualHow well does an angiosperm-wide vs. a family-specific targeted sequencing probe kit unravel relationships in the pantropical OchnaceaeOral PaperShah, Toral; Schneider, Julio; Zizka, Georg; Maurin, Olivier; Baker, William J.; Forest, Félix; Brewer, Grace E.; Savolainen, Vincent; Darbyshire, Iain; Larridon, Isabel.Ochnaceae
missing data
probe kit
Targeted sequencing
phylogenetic informativeness
Coalescence
PHYL1008July 27th 2:15 pmVirtual/VirtualA new nuclear phylogeny unravels fast-moving radiations in the TheaceaeOral PaperYan, Yujing.Target Enrichment
Hybpiper
Theeae
Camellia
Incomplete lineage sorting
NGS filtering strategies

Wednesday, July 29th

Wednesday, July 29th, 12:30 pm to 2:30 pm · Virtual/Virtual
Session PHYL2: Contributed Papers: Phylogenomics II
Presiding: Susan Strickler, Boyce Thompson Institute For Plant Research ; Richard Hodel, National Museum of Natural History
PHYL2001July 29th 12:30 pmVirtual/VirtualGenome sequence for the purple-flowered Andean shrub Iochroma cyaneum (Solanaceae)Oral PaperStrickler, Susan; Gates, Daniel; Powell, Adrian; Hauser, Duncan; Vilela, Julianne; Hu, Alice; Li, Fay-Wei; Mueller, Lukas; Smith, Stacey.Iochroma
genome assembly
phylogenomics
PHYL2002July 29th 12:45 pmVirtual/VirtualMolecular identification and phylogenomic resolution of Aloe vera and relatives using customised nuclear target enrichmentOral PaperWoudstra, Yannick; Viruel, Juan; Howard, Caroline; Rønsted, Nina; Grace, Olwen.target capture
Targeted sequencing
next-generation sequencing
ASTRAL
Aloe ferox
Aloe arborescens
herbarium specimens
Aloiampelos
Xanthorrhoeaceae
phylogeny
phylogenomics
Systematics
DNA barcoding
Aloe barbadensis
PHYL2003July 29th 1:00 pmVirtual/VirtualUntangling big genera using big data: Phylogenomics of Piper and Peperomia (Piperacae)Oral PaperSimmonds, Sara; Smith, James; Davidson, Christopher; Buerki, Sven.chloroplast
genome skimming
nuclear ribosomal DNA
phylogenomics
comparative genomics
Pipera
PHYL2004July 29th 1:15 pmVirtual/VirtualBiogeography and ecological niche evolution in Diapensiaceae inferred from phylogenetic analysisOral PaperGaynor, Michelle; Fu, Chaonan; Gao, Lianming; Lu, Li-Min; Soltis, Douglas; Soltis, Pamela.Diapensiaceae
Angiosperm353
climatic niche
ecological niche modelling
PHYL2005July 29th 1:30 pmVirtual/VirtualNuclear phylogenomic analysis resolves the backbone of Prunus and identifies lineages impacted by frequent reticulate evolutionOral PaperHodel, Richard; Zimmer, Elizabeth; Wen, Jun.allopolyploidy
hybridization
reticulate evolution
gene tree discord
transcriptome
plastome
PHYL2006July 29th 1:45 pmVirtual/VirtualA new extant cyanobacterial lineage that diverged from Gloeobacterover 1.4 billion years Oral PaperRahmatpour, Nasim; Hauser, Duncan; Nelson, Jessica; Villarreal Aguilar, Juan Carlos; Ho, Ming-Yang; Li, Fay-Wei.photosynthesis
Cyanobacteria
Wednesday, July 29th, 5:00 pm to 6:00 pm · Virtual/Virtual
Session P: Contributed Posters: Phylogenomics Posters
PPL001July 29th 5:00 pmVirtual/VirtualSex determination, speciation, and reproductive incompatibility in AmaranthusPoster: PhylogenomicsDzurlic, Jasmina.phylogenomics
PPL002July 29th 5:00 pmVirtual/VirtualMuseomics unveil the phylogeny and biogeography of the neglected Juan Fernandez archipelago Megalachne and Podophorus endemic grasses and their connection with relict Pampean-Ventanian fescuesPoster: PhylogenomicsMoreno Aguilar, Maria Fernanda; Arnelas Seco, Itziar; Sanchez Rodriguez, Aminael; Viruel, Juan; Catalan, Pilar.ancestral range reconstruction
endemic Loliinae gasses
Fernandezian clade
genome skimming
phylogenomics
taxonomically neglected species
PPL003July 29th 5:00 pmVirtual/VirtualGenotyping-by-sequencing reveals the impact of climatic niche on the successful colonization of Madeira by ivies (Hedera L., Araliaceae)Poster: PhylogenomicsAlonso, Alejandro; Coca, Marina; Monjas, David; Gallego-Narbón, Angélica ; Fernández-Mazuecos, Mario; Valcarcel, Virginia.Hedera
GBS
Macaronesia
climatic niche
PPL004July 29th 5:00 pmVirtual/VirtualReconstructing the rapid radiation of pleurocarpous mosses using 802 nuclear genesPoster: PhylogenomicsAngulo, Juan; Wickett, Norman; Pokorny, Lisa; Johnson, Matt; Medina, Rafael; Goffinet, Bernard; Shaw, Jonathan; Liu, Yang.moss
Hypnanae
phylogenomics
PPL005July 29th 5:00 pmVirtual/VirtualChloroplast phylogenomics and character evolution of Eastern Asian Astragalus (Leguminosae) – tackling the phylogenetic structure of the largest genus of flowering plants in AsiaPoster: PhylogenomicsSU, CHUN; Duan, Lei; Chang, Zhaoyang; Wen, Jun.Astragalus
Chloroplast Genome
East Asia
trichome

Friday, July 31st

Friday, July 31st, 10:00 am to 12:00 pm · Virtual/Virtual
Session PHYL3: Contributed Papers: Phylogenomics III
Presiding: Sandra Hoffberg, Columbia University; Patrick McKenzie, Columbia University
PHYL3001July 31st 10:00 amVirtual/VirtualImproved and automated marker recovery from targeted capture dataOral PaperOrtiz, Edgardo M.; Schaefer, Hanno.target capture
enrichment
Angiosperms353
assembly
alignment
PHYL3002July 31st 10:15 amVirtual/VirtualAmount of hybridization differs with varying gene tree lengths in reference aligned RADseq dataOral PaperHoffberg, Sandra; Eaton, Deren.Gene tree discordance
hybridization
simulated sequence data
RADSeq
network analysis
Phylogenetics
PHYL3003July 31st 10:30 amVirtual/VirtualPhylogenomics, floral evolution, and formation of an ornamented ring species-complex in the Bay Area Clade of Calochortus (Liliaceae)Oral PaperGivnish, Thomas; Lemmon, Alan; Lemmon, Emily; Specht, Chelsea; Eifler, Evan; Karimi, Nisa.historical biogeography
phylogenomics
California Floristic Province
convergence
PHYL3004July 31st 10:45 amVirtual/VirtualNovel Phylogenomics in Geissorhiza (Iridaceae): Preliminary results from the Cape Floristic RegionOral PaperEifler, Evan; Lemmon, Alan; Lemmon, Emily; Givnish, Thomas.phylogenomics
Biogeography
Systematics
character evolution
PHYL3005July 31st 11:00 amVirtual/VirtualMolecular assessment of the Azorella multifida complex and its diversification within humid upper Andean habitatsOral PaperNicolas, Antoine; Alfaro, Bryan; Babio, Lucas; Ferraro, Justin; Franklin, Sean; Nair, Harikrishnan; Plunkett, Gregory.Azorella
Páramos
Jalca
Andes
Species Complex
PHYL3006July 31st 11:15 amVirtual/VirtualUsing ipcoal to simulate and visualize genealogies and sequences on species trees or networksOral PaperMcKenzie, Patrick; Eaton, Deren.methods
Multispecies Coalescent
simulation
phylogeny
PHYL3007July 31st 11:30 amVirtual/VirtualPhylogenomics of Aralia sect. Aralia (Araliaceae): insights into its species delimitations and diversification in eastern AsiaOral PaperLiu, Jing; Ren, Chen; Wen, Jun.Araliaceae
Aralia
Biogeography
phylogenomics
eastern Asian - North American disjunction
Friday, July 31st, 3:00 pm to 5:00 pm · Virtual/Virtual
Session PHYL4: Contributed Papers: Phylogenomics IV
Presiding: Joseph Pires, University Of Missouri; Michael McKain, University Of Alabama
PHYL4001July 31st 3:00 pmVirtual/VirtualA new (old) approach to genotype-based phylogenomic inference within species, with an example from the saguaro cactus (Carnegiea gigantea)Oral PaperSanderson, Michael; Burquez, Alberto; Copetti, Dario; McMahon, Michelle; Zeng, Yichao; Wojciechowski, Martin.
PHYL4002July 31st 3:15 pmVirtual/VirtualPhylogeny and multiple independent whole-genome duplication events in the Brassicales Oral PaperMabry, Makenzie; Pires, Joseph.phylogenomics
Brassicales
polyploidy
Genomes
Whole-genome duplication
Brassicaceae
Cleomaceae
PHYL4003July 31st 3:30 pmVirtual/VirtualPhylogenomics, reticulate evolution, historical biogeography, shifts in climatic niche, and parallel adaptive radiations in floral syndrome in the genus Calochortus (Liliaceae)Oral PaperKarimi, Nisa; Lemmon, Alan; Lemmon, Emily; Hernandez, Adriana; Eifler, Evan; Strickler, Susan; Specht, Chelsea; Givnish, Thomas.
PHYL4004July 31st 3:45 pmVirtual/VirtualDispelling the Mirage of C4 Driven Drought Tolerance in Poaceae: A Phylogenomic StudyOral PaperNissenbaum, Matthew; Burke, Sean; Orton, Lauren; Holthuijzen, Wieteke; Duvall, M.photosynthesis
C4 photosynthesis
Drought
drought tolerance
Ancestral character state reconstruction
PHYL4005July 31st 4:00 pmVirtual/VirtualPhylogenomics of the genus Hosta: Disentangling the impact of an ancient polyploid event on phylogeny resolutionOral PaperLewis, Michelle; Blakely, Sarah; McKain, Michael.chloroplast
target capture
Angiosperm353
Hosta
Agavoideae
polyploidy
PHYL4006July 31st 4:15 pmVirtual/VirtualPhylogenomics of Hamamelis and Castanea with 353 Angiosperm genes and RAD-seq data – A proposed approach for cleaning the paralogsOral PaperZhou, Wenbin; Zhou, Wenbin; Soghigian, John; Xiang, Jenny.Target Enrichment
Angiosperm 353
Paralogs
heterozygousity
PHYL4007July 31st 4:30 pmVirtual/VirtualExtract and annotate genes from raw RNA-seq reads: kakapoOral PaperRamanauskas, Karolis; Igić, Boris; Igić, Boris; Igić, Boris; Igić, Boris.SRA
RNA-seq
self-incompatibility
gene family evolution
evolution

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